PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F03904.1.p
Common NameEUGRSUZ_F03904, LOC104450584
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 753aa    MW: 86568.3 Da    PI: 4.7094
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F03904.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.12.6e-22140224190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       ++Yn+Y+ke+GF +r+++s ++++++e   + ++C++eg+++ ++ +     ++r+etrtgC a++++++ ++++w+v++++leHnH++ 
  Eucgr.F03904.1.p 140 NYYNTYSKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKEAS-----SRRKETRTGCLAMIRLRLVDSNRWRVDEVKLEHNHSFD 224
                       69****************************************98877.....8999*******************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-19140224IPR004330FAR1 DNA binding domain
PfamPF105512.5E-24343436IPR018289MULE transposase domain
PROSITE profilePS509669.866629665IPR007527Zinc finger, SWIM-type
SMARTSM005753.6E-5640667IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MSGDSNLSPN NKAFPPSRNL NISVEQGSPD SEELIEEEAH VLEIDGDEIE NDSEEELELN  60
DGEHELELND GEQDLELNDG EQVLELNGVE QGLEILEEEE EEIVGDGSVG TDVHNGTSDV  120
KEYPPPFVGM EFDTYDDAYN YYNTYSKELG FAIRVKSSWT KRNSKEKRGA VLCCNCEGFK  180
TIKEASSRRK ETRTGCLAMI RLRLVDSNRW RVDEVKLEHN HSFDPLRAKN SKSHKRMDAG  240
AKHKLEPNLD VEVRTIKLYR TPVIDTMGCG SSYSCERETG FDRAKRLKLN KGDAQVMHDF  300
FNQMQLVDPN FLYLMDLGDE GYLKNVFWID SRSRAAYGYF GDVVVFETMN LSNNCEIPLF  360
AYVGVNHHGN NVLLGCALIS DSSLETYIWL FRAWLTCMSG RPPQTIITDQ CQAMQSAIAE  420
VFPRAHHRLS LSYVMQSICE KVTVLQESEA FLTLLNSTVY DIPKVEEFET AWEEIMRRFG  480
IKDQEWLQAL YETRERWAPV YSKDTFFAGQ NGFHRGNSKS LFFDGDVLQQ TSLKEFLLAY  540
ESFLQQKKQK ELLDDLESRD LSAMLKTSSH YELQLSKLYT KAIFTKFQDE VVMMSSCLDV  600
TQVHASGPIV TYSVKERDGD GDLEDVRHFE VIYDKAGTEV RCICSCFNFK GYLCRHALCV  660
LNYNQVEEIP FQYILSRWRK DFKRLYVPEF GSNNIDVSNP VQWFDHLYRK AIRVVEEGMM  720
SQDHYMVAWQ AFKESLNKVR LVADKSNNHF NV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F03904.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010063490.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 8
RefseqXP_010063492.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 8
RefseqXP_010063493.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 8
SwissprotQ9S7930.0FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBLA0A059BXP90.0A0A059BXP9_EUCGR; Uncharacterized protein
STRINGGLYMA15G13160.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142332021
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.10.0FAR1-related sequence 8